中国科学院深海科学与工程研究所“海洋微生物分子生态学研究组”受“知识创新工程前沿领域”等项目资助，于2013年3月成立，主要开展深海深渊微生物的分子生态学研究。
研究方向
深海深渊微生物生理生态
微生物是海洋生态系统的重要组成部分。在深海深渊等生境中开展相关研究有助于探讨微生物在极端环境下的组成、分布及生命活动规律，为生物进化研究提供理论基础。
深海深渊生物地球化学
深海深渊存在着活跃的生物地球化学过程，其中许多关键过程均由微生物介导。此交叉学科研究有助于理解深海及深部生物圈中微生物参与的元素循环过程和机制。
学科带头人
荆红梅，研究员，博士生导师（博士，香港大学，2006）
海洋微生物分子生态学研究组学科带头人
联系电话：0898-88381165；
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个人信息：
博士后、项目助理招聘中：
团队成员
刘 皓，博士，副研究员，硕士生导师
电子邮箱：
张 玥，博士，特别研究助理
电子邮箱：
李英东，博士，博士后
电子邮箱：
在读研究生
王镨蒂，2023级博士研究生
肖 瑶，2023级博士研究生
张 薇，2022级硕士研究生
吴盛楠，2024级硕士研究生
刘莉莉，2024级硕士研究生
已毕业研究生
张 玥，博士，2016级博士研究生
姜秋云，博士，2019级博士研究生
王芳洲，博士，2020级博士研究生
周 鹏，硕士，2013级硕士研究生
许秋彤，硕士，2014级硕士研究生
朱文达，硕士，2015级硕士研究生
黄 宁，硕士，2017级硕士研究生
韦 誉，硕士，2017级硕士研究生
近五年发表文章
1. hu aoran, zhao weishu, wang jing, qi qi, xiao, xiang, jing hongmei*. microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep. environmental microbiology reports, 2024,16(4), e13314.
2. li yingdong, wang ting, jing hongmei*, xiao yao. evolutionary ecology of denitrifying methanotrophic nc10 bacteria in the deep‐sea biosphere. molecular ecology, 2024, e17372.
3. liu hao, jing hongmei*. the vertical metabolic activity and community structure of prokaryotes along different water depths in the kermadec and diamantina trenches. microorganisms, 2024, 12(4), 708.
4. zhang yue, jing hongmei*. deterministic process controlling the prokaryotic community assembly across seamounts along in the yap and mariana trenches. ecological indicators, 2024, 111538.
5. chen hao*, li chaolun, qiu jian-wen, bettencourt raul, feng dong, wang yong, jing hongmei*, et al. editorial: deep-sea chemosynthetic ecosystems: living in extreme environments. frontiers in marine science, 2023, 10, 1087465.
6. jing hongmei*. microbial communities reveal niche pliu hao, jing hongmei*, wang fangzhou. archaea predominate in the ammonia oxidation process in the sediments of the yap and mariana trenches. frontiers in microbiology, 2023, 14, 1268790.
7. zhang yue, xia xiaomin, wan linglin, han bo-ping, liu hongbin, jing hongmei*. microbial communities are shaped by different ecological processes in subtropical reservoirs of different trophic states. microbial ecology, 2023, 86(3), 2073-2085.
8. zhang yue, liu hongbin, huang ning, peng xiaotong*, jing hongmei*. geographical distribution and driving force of micro-eukaryotes in the seamount sediments along the island arc of the yap and mariana trenches. microbiology spectrum, 2023, 11(6):e0206923.
9. jiang qiuyun, jing hongmei*, li xuegong, et al. active pathways of anaerobic methane oxidization in deep-sea cold seeps of the south china sea. microbiology spectrum, 2023, 11(6):e0250523.
10. jiang qiuyun, jing hongmei*, liu hao,et al. biogeographic distributions of microbial communities associated with anaerobic methane oxidation in the surface sediments of deep-sea cold seeps in the south china sea. frontiers in microbiology, 2022, 13:1060206.
11. liu hao, wang fangzhou, liu hongbin, jing hongmei*. metabolic activity and community structure of prokaryotes associated with particles in the twilight zone of the south china sea. frontiers in microbiology, 2022, 13:1056860.
12. wang fangzhou, zhang yue, jing hongmei*, et al. spatial variation and metabolic diversity of microbial communities in the surface sediments of the mariana trench. frontiers in microbiology, 2022, 13:1051999.
13. wang ting, xia xiaomin, chen jiawei, liu hongbin, jing hongmei*. spatio-temporal variation of synechococcus assemblages at dna and cdna levels in the tropical estuarine and coastal waters. frontiers in microbiology, 2022, 13:837037.
14. jing hongmei*, xiao xiang, zhang yue, et al. composition and ecological roles of the core microbiome along the abyssal-hadal transition zone sediments of the mariana trench. microbiology spectrum, 2022, 10(3):e0198821.
15. zhang yue, huang ning, jing hongmei*. biogeography and population divergence of microeukaryotes associated with fluids and chimneys in the hydrothermal vents of the southwest indian ocean. microbiology spectrum, 2022, 10(5):e0263221.
16. jamy mahwash, biwer charlie, vaulot daniel, obiol aleix, jing hongmei, et al. global patterns and rates of habitat transitions across the eukaryotic tree of life. nature ecology & evolution, 2022, 6(10):1458-1470.
17. jiang qiuyun, jing hongmei*, jiang qiulong, et al. insights into carbon-fixation pathways through metagonomics in the sediments of deep-sea cold seeps. marine pollution bulletin, 2022, 176:113458.
18. liu hao, zhou peng, cheung shunyan, lu yanhong, liu hongbin, jing hongmei*. distribution and oxidation rates of ammonia-oxidizing archaea influenced by the coastal upwelling off eastern hainan island. microorganisms, 2022, 10(5):952.
19. du mengran, peng xiaotong*, zhang haibin,ye cong, dasgupta shamik, li jiwei, li jiangtao, liu shuangquan, xu hengchao, chen chuanxu, jing hongmei, et al. geology, environment and life of the deepest part of the world's ocean, innovation, 2021, 2(2):100109.
20. jian huahua, yi yi, wang jiahua, hao yali, zhang mujie, wang siyuan, meng canxing, zhang yue, jing hongmei, et al. diversity and distribution of viruses inhabiting the deepest ocean on earth. the isme journal, 2021, 15(10): 3049-3110.
21. xia xiaomin, zheng qiang, leung sze ki, wang yu, lee pui yin, jing hongmei, et al. distinct metabolic strategies of the dominant heterotrophic bacterial groups associated with marine synechococcusa. science of the total environment, 2021, 798: 149208.
22. zhao jiulong, jing hongmei*, wang zengmeng, et al. novel viral communities potentially assisting in carbon, nitrogen, and sulfur metabolism in the upper slope sediments of mariana trench. msystems, 2021, 7(1):e0135821.
23. zhang yue, huang ning, wang minxiao, liu hongbin, jing hongmei*. microbial eukaryotes associated with sediments in deep-sea cold seeps. frontiers in microbiology, 2021, 12:782004.
24. zhang yue, jing hongmei*, peng x*. vertical shifts of particle-attached and free-living prokaryotes in the water column above the cold seeps of the south china sea. marine pollution bulletin, 2020, 156:111230.
25. jing hongmei*, wang ruonan, jiang qiuyun, et al. anaerobic methane oxidation coupled to denitrification is an important potential methane sink in deep-sea cold seeps. the science of the total environment, 2020, 748:142459.
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